HL_8PVA_012

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8PVA|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVA_012 not in the Motif Atlas

Geometric match to HL_5J7L_012

Geometric discrepancy: 0.2105

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8PVA|1|A|G|462
8PVA|1|A|U|463
8PVA|1|A|U|464
8PVA|1|A|A|465
8PVA|1|A|A|466
8PVA|1|A|U|467
8PVA|1|A|A|468
8PVA|1|A|C|469
8PVA|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains