HL_8PVA_032
3D structure
- PDB id
- 8PVA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial ribosome determined by cryoEM at 100 keV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CCUUACAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PVA_032 not in the Motif Atlas
- Homologous match to HL_5IBB_210
- Geometric discrepancy: 0.1013
- The information below is about HL_5IBB_210
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8PVA|1|Y|C|31
8PVA|1|Y|C|32
8PVA|1|Y|U|33
8PVA|1|Y|U|34
8PVA|1|Y|A|35
8PVA|1|Y|C|36
8PVA|1|Y|A|37
8PVA|1|Y|A|38
8PVA|1|Y|G|39
Current chains
- Chain Y
- A-site tRNA-val
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- Small ribosomal subunit protein uS12
- Chain X
- mRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
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