HL_8PVA_034
3D structure
- PDB id
- 8PVA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial ribosome determined by cryoEM at 100 keV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 8PVA|1|Z|C|16, 8PVA|1|Z|G|18, 8PVA|1|Z|G|19, 8PVA|1|Z|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PVA_034 not in the Motif Atlas
- Homologous match to HL_4LCK_001
- Geometric discrepancy: 0.1638
- The information below is about HL_4LCK_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PVA|1|Z|C|13
8PVA|1|Z|A|14
8PVA|1|Z|G|15
8PVA|1|Z|C|16
8PVA|1|Z|C|17
8PVA|1|Z|U|17|||A
8PVA|1|Z|G|18
8PVA|1|Z|G|19
8PVA|1|Z|U|20
8PVA|1|Z|A|21
8PVA|1|Z|G|22
Current chains
- Chain Z
- P-site tRNA-fMet
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Large ribosomal subunit protein uL5
Coloring options: