HL_8PVA_063

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVA_063 not in the Motif Atlas

Geometric match to HL_5J7L_160

Geometric discrepancy: 0.074

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8PVA|1|a|G|978
8PVA|1|a|A|979
8PVA|1|a|A|980
8PVA|1|a|A|981
8PVA|1|a|C|982
8PVA|1|a|A|983
8PVA|1|a|A|984
8PVA|1|a|C|985

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain q

50S ribosomal protein L21

Chain y

50S ribosomal protein L30