HL_8PVA_068

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8PVA|1|a|U|1396, 8PVA|1|a|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVA_068 not in the Motif Atlas

Geometric match to HL_5J7L_168

Geometric discrepancy: 0.0679

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8PVA|1|a|G|1389
8PVA|1|a|U|1390
8PVA|1|a|U|1391
8PVA|1|a|A|1392
8PVA|1|a|A|1393
8PVA|1|a|U|1394
8PVA|1|a|A|1395
8PVA|1|a|U|1396
8PVA|1|a|U|1397
8PVA|1|a|C|1398

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L23