HL_8PVA_080

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

8PVA|1|a|C|1870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVA_080 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.2062

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

8PVA|1|a|C|1868
8PVA|1|a|G|1869
8PVA|1|a|C|1870
8PVA|1|a|A|1871
8PVA|1|a|A|1872
8PVA|1|a|G|1873

Current chains

Chain a

23S rRNA

Nearby chains