HL_8PVK_035

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CACUCGUG

Length

8 nucleotides

Bulged bases

8PVK|1|C1|C|1551, 8PVK|1|C1|G|1552, 8PVK|1|C1|U|1553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PVK|1|C1|C|1547
8PVK|1|C1|A|1548
8PVK|1|C1|C|1549
8PVK|1|C1|U|1550
8PVK|1|C1|C|1551
8PVK|1|C1|G|1552
8PVK|1|C1|U|1553
8PVK|1|C1|G|1554

Current chains

Chain C1

26S rRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain CJ

Pescadillo homolog

Chain CM

60S ribosomal protein l7-like protein

Chain Ce

Ribosome biogenesis protein NOP53