HL_8PVK_040
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- CACUUCUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PVK_040 not in the Motif Atlas
- Geometric match to HL_6JQ6_004
- Geometric discrepancy: 0.3947
- The information below is about HL_6JQ6_004
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_61337.3
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 62
Unit IDs
8PVK|1|C1|C|1739
8PVK|1|C1|A|1740
8PVK|1|C1|C|1741
8PVK|1|C1|U|1742
8PVK|1|C1|U|1743
8PVK|1|C1|C|1744
8PVK|1|C1|U|1745
8PVK|1|C1|G|1746
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LR
- Ribosomal protein L19
- Chain LU
- 60S ribosomal protein L22-like protein
- Chain Lk
- 60S ribosomal protein L38-like protein
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