HL_8PVK_053

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8PVK|1|C1|U|2435

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVK_053 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2371

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8PVK|1|C1|C|2433
8PVK|1|C1|U|2434
8PVK|1|C1|U|2435
8PVK|1|C1|C|2436
8PVK|1|C1|G|2437
8PVK|1|C1|G|2438

Current chains

Chain C1

26S rRNA

Nearby chains

Chain C4

5S ribosomal RNA; 5S rRNA

Chain Lr

Ribosomal protein