HL_8PVK_055

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CUUCGCG

Length

7 nucleotides

Bulged bases

8PVK|1|C1|U|2529, 8PVK|1|C1|C|2532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVK_055 not in the Motif Atlas

Geometric match to HL_7RQB_024

Geometric discrepancy: 0.2254

The information below is about HL_7RQB_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74322.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

4

Unit IDs

8PVK|1|C1|C|2527
8PVK|1|C1|U|2528
8PVK|1|C1|U|2529
8PVK|1|C1|C|2530
8PVK|1|C1|G|2531
8PVK|1|C1|C|2532
8PVK|1|C1|G|2533

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CJ

Pescadillo homolog

Chain CM

60S ribosomal protein l7-like protein

Chain Ce

Ribosome biogenesis protein NOP53

Chain LZ

60S ribosomal protein L27