HL_8PVK_061

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

8PVK|1|C1|U|2802, 8PVK|1|C1|C|2803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVK_061 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.1907

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

8PVK|1|C1|C|2799
8PVK|1|C1|G|2800
8PVK|1|C1|U|2801
8PVK|1|C1|U|2802
8PVK|1|C1|C|2803
8PVK|1|C1|A|2804
8PVK|1|C1|U|2805
8PVK|1|C1|A|2806
8PVK|1|C1|G|2807

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CL

Putative GTP binding protein

Chain Cz

rRNA-processing protein

Chain LS

60S ribosomal protein L20