HL_8PVK_070

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GCAGACGAC

Length

9 nucleotides

Bulged bases

8PVK|1|C1|C|3245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVK_070 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0803

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8PVK|1|C1|G|3244
8PVK|1|C1|C|3245
8PVK|1|C1|A|3246
8PVK|1|C1|G|3247
8PVK|1|C1|A|3248
8PVK|1|C1|C|3249
8PVK|1|C1|G|3250
8PVK|1|C1|A|3251
8PVK|1|C1|C|3252

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LP

60S ribosomal protein l17-like protein