HL_8PVK_079

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGUGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVK_079 not in the Motif Atlas

Homologous match to HL_4V9F_072

Geometric discrepancy: 0.4391

The information below is about HL_4V9F_072

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8PVK|1|C4|G|87
8PVK|1|C4|G|88
8PVK|1|C4|U|89
8PVK|1|C4|G|90
8PVK|1|C4|A|91
8PVK|1|C4|C|92

Current chains

Chain C4

5S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA