HL_8PVL_040
3D structure
- PDB id
- 8PVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- CACUUCUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PVL_040 not in the Motif Atlas
- Geometric match to HL_7VTI_001
- Geometric discrepancy: 0.1106
- The information below is about HL_7VTI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89167.2
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
8PVL|1|C1|C|1739
8PVL|1|C1|A|1740
8PVL|1|C1|C|1741
8PVL|1|C1|U|1742
8PVL|1|C1|U|1743
8PVL|1|C1|C|1744
8PVL|1|C1|U|1745
8PVL|1|C1|G|1746
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LR
- Ribosomal protein L19
- Chain LU
- 60S ribosomal protein L22-like protein
- Chain Lk
- 60S ribosomal protein L38-like protein
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