HL_8PVL_044

3D structure

PDB id

8PVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8PVL|1|C1|U|1905

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVL_044 not in the Motif Atlas

Geometric match to HL_4V9F_044

Geometric discrepancy: 0.0692

The information below is about HL_4V9F_044

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8PVL|1|C1|C|1903
8PVL|1|C1|U|1904
8PVL|1|C1|U|1905
8PVL|1|C1|C|1906
8PVL|1|C1|G|1907
8PVL|1|C1|G|1908

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cd

Nucleolar GTP-binding protein 2

Chain Cf

Ribosome production factor 2 homolog

Chain Lp

60S ribosomal protein L43-like protein