HL_8PVL_046

3D structure

PDB id

8PVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVL_046 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.1839

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8PVL|1|C1|G|2073
8PVL|1|C1|G|2074
8PVL|1|C1|U|2075
8PVL|1|C1|A|2076
8PVL|1|C1|C|2077

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CQ

Ribosome biogenesis protein RLP24

Chain Cb

Zinc finger domain-containing protein

Chain LR

Ribosomal protein L19