HL_8Q4F_016

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_016 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.1144

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8Q4F|1|A|C|726
8Q4F|1|A|G|727
8Q4F|1|A|A|728
8Q4F|1|A|A|729
8Q4F|1|A|G|730
8Q4F|1|A|G|731

Current chains

Chain A

16S rRNA

Nearby chains

Chain O

Small ribosomal subunit protein uS15

Chain U

Small ribosomal subunit protein bS21