HL_8Q4F_034
3D structure
- PDB id
- 8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of arbekacin bound Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Q4F_034 not in the Motif Atlas
- Homologous match to HL_5AH5_008
- Geometric discrepancy: 0.161
- The information below is about HL_5AH5_008
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
8Q4F|1|Z|G|53
8Q4F|1|Z|U|54
8Q4F|1|Z|U|55
8Q4F|1|Z|C|56
8Q4F|1|Z|A|57
8Q4F|1|Z|A|58
8Q4F|1|Z|A|59
8Q4F|1|Z|U|60
8Q4F|1|Z|C|61
Current chains
- Chain Z
- tRNA-fMet
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain l
- 50S ribosomal protein L16
Coloring options: