3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGGCGAG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8Q4F_042 not in the Motif Atlas
Homologous match to HL_8VTW_007
Geometric discrepancy: 0.1043
The information below is about HL_8VTW_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_67216.9
Basepair signature
cWW-cWW-F-tSH
Number of instances in this motif group
9

Unit IDs

8Q4F|1|a|C|246
8Q4F|1|a|G|247
8Q4F|1|a|G|248
8Q4F|1|a|C|249
8Q4F|1|a|G|250
8Q4F|1|a|A|251
8Q4F|1|a|G|252

Current chains

Chain a
23S rRNA

Nearby chains

Chain 2
Large ribosomal subunit protein bL35
Chain k
Large ribosomal subunit protein uL15

Coloring options:


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