HL_8Q4F_059

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_059 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.2658

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

8Q4F|1|a|C|885
8Q4F|1|a|A|886
8Q4F|1|a|U|887
8Q4F|1|a|C|888
8Q4F|1|a|C|889
8Q4F|1|a|C|890
8Q4F|1|a|G|891

Current chains

Chain a

23S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13