HL_8Q4F_067

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8Q4F|1|a|U|1396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_067 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.2263

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8Q4F|1|a|G|1389
8Q4F|1|a|U|1390
8Q4F|1|a|U|1391
8Q4F|1|a|A|1392
8Q4F|1|a|A|1393
8Q4F|1|a|U|1394
8Q4F|1|a|A|1395
8Q4F|1|a|U|1396
8Q4F|1|a|U|1397
8Q4F|1|a|C|1398

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23