HL_8Q4F_074

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8Q4F|1|a|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_074 not in the Motif Atlas

Geometric match to HL_7A0S_042

Geometric discrepancy: 0.11

The information below is about HL_7A0S_042

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8Q4F|1|a|C|1691
8Q4F|1|a|U|1692
8Q4F|1|a|U|1693
8Q4F|1|a|C|1694
8Q4F|1|a|G|1695
8Q4F|1|a|G|1696

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

Large ribosomal subunit protein uL2