3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
8Q4F|1|a|U|1693
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8Q4F_074 not in the Motif Atlas
Geometric match to HL_7A0S_042
Geometric discrepancy: 0.11
The information below is about HL_7A0S_042
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

8Q4F|1|a|C|1691
8Q4F|1|a|U|1692
8Q4F|1|a|U|1693
8Q4F|1|a|C|1694
8Q4F|1|a|G|1695
8Q4F|1|a|G|1696

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain c
Large ribosomal subunit protein uL2

Coloring options:


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