HL_8Q4F_075

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

8Q4F|1|a|U|1729, 8Q4F|1|a|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_075 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.3321

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

8Q4F|1|a|C|1727
8Q4F|1|a|C|1728
8Q4F|1|a|U|1729
8Q4F|1|a|C|1730
8Q4F|1|a|G|1731
8Q4F|1|a|C|1732
8Q4F|1|a|G|1733

Current chains

Chain a

23S rRNA

Nearby chains