HL_8Q4F_082

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGAGAUGC

Length

9 nucleotides

Bulged bases

8Q4F|1|a|A|2031, 8Q4F|1|a|G|2032

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_082 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1728

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

8Q4F|1|a|G|2027
8Q4F|1|a|U|2028
8Q4F|1|a|G|2029
8Q4F|1|a|A|2031
8Q4F|1|a|G|2032
8Q4F|1|a|A|2033
8Q4F|1|a|U|2034
8Q4F|1|a|G|2035
8Q4F|1|a|C|2036

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain z

Large ribosomal subunit protein bL32