HL_8Q4F_083

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUAUG

Length

6 nucleotides

Bulged bases

8Q4F|1|a|A|2191

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_083 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3768

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

8Q4F|1|a|C|2096
8Q4F|1|a|A|2097
8Q4F|1|a|U|2098
8Q4F|1|a|A|2191
8Q4F|1|a|U|2192
8Q4F|1|a|G|2193

Current chains

Chain a

23S rRNA

Nearby chains