HL_8Q4F_085
3D structure
- PDB id
- 8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of arbekacin bound Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGGGCGG
- Length
- 8 nucleotides
- Bulged bases
- 8Q4F|1|a|G|2250
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Q4F_085 not in the Motif Atlas
- Homologous match to HL_8VTW_052
- Geometric discrepancy: 0.2074
- The information below is about HL_8VTW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
8Q4F|1|a|C|2248
8Q4F|1|a|U|2249
8Q4F|1|a|G|2250
8Q4F|1|a|G|2252
8Q4F|1|a|G|2253
8Q4F|1|a|C|2254
8Q4F|1|a|G|2255
8Q4F|1|a|G|2256
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain Z
- Transfer RNA; tRNA
- Chain l
- 50S ribosomal protein L16
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: