HL_8Q4F_100

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

8Q4F|1|a|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_100 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1189

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8Q4F|1|a|G|2819
8Q4F|1|a|A|2820
8Q4F|1|a|A|2821
8Q4F|1|a|G|2822
8Q4F|1|a|A|2823
8Q4F|1|a|C|2824
8Q4F|1|a|G|2825
8Q4F|1|a|A|2826
8Q4F|1|a|C|2827

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain m

Large ribosomal subunit protein bL17