3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGAAACAACC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8Q4F_110 not in the Motif Atlas
Geometric match to HL_1KH6_003
Geometric discrepancy: 0.2309
The information below is about HL_1KH6_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_27483.1
Basepair signature
cWW-F
Number of instances in this motif group
2

Unit IDs

8Q4F|1|a|G|977
8Q4F|1|a|G|978
8Q4F|1|a|A|979
8Q4F|1|a|A|980
8Q4F|1|a|A|981
8Q4F|1|a|C|982
8Q4F|1|a|A|983
8Q4F|1|a|A|984
8Q4F|1|a|C|985
8Q4F|1|a|C|986

Current chains

Chain a
23S rRNA

Nearby chains

Chain b
5S ribosomal RNA; 5S rRNA
Chain p
Large ribosomal subunit protein bL20
Chain q
Large ribosomal subunit protein bL21
Chain y
Large ribosomal subunit protein uL30

Coloring options:


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