HL_8Q4F_110
3D structure
- PDB id
- 8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of arbekacin bound Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAAACAACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Q4F_110 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.2309
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27483.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8Q4F|1|a|G|977
8Q4F|1|a|G|978
8Q4F|1|a|A|979
8Q4F|1|a|A|980
8Q4F|1|a|A|981
8Q4F|1|a|C|982
8Q4F|1|a|A|983
8Q4F|1|a|A|984
8Q4F|1|a|C|985
8Q4F|1|a|C|986
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain p
- Large ribosomal subunit protein bL20
- Chain q
- Large ribosomal subunit protein bL21
- Chain y
- Large ribosomal subunit protein uL30
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