HL_8Q4F_113

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCAAUGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_113 not in the Motif Atlas

Geometric match to HL_8H1B_001

Geometric discrepancy: 0.2598

The information below is about HL_8H1B_001

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8Q4F|1|a|G|2323
8Q4F|1|a|U|2324
8Q4F|1|a|G|2325
8Q4F|1|a|C|2326
8Q4F|1|a|A|2327
8Q4F|1|a|A|2328
8Q4F|1|a|U|2329
8Q4F|1|a|G|2330
8Q4F|1|a|G|2331
8Q4F|1|a|C|2332

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain f

Large ribosomal subunit protein uL5

Chain v

Large ribosomal subunit protein bL27