HL_8Q5I_005

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8Q5I|1|1|C|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0575

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8Q5I|1|1|U|193
8Q5I|1|1|U|194
8Q5I|1|1|G|195
8Q5I|1|1|G|196
8Q5I|1|1|A|197
8Q5I|1|1|A|198
8Q5I|1|1|C|199
8Q5I|1|1|A|200

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 9

Ribosomal protein L24

Chain AF

60S ribosomal protein L32

Chain l

60S ribosomal protein L4-B