HL_8Q5I_016

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_016 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.035

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8Q5I|1|1|U|705
8Q5I|1|1|G|706
8Q5I|1|1|A|707
8Q5I|1|1|A|708
8Q5I|1|1|A|709
8Q5I|1|1|G|710

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L28

Chain AJ

60S ribosomal protein L36

Chain t

60S ribosomal protein L13

Chain y

60S ribosomal protein L18-A