HL_8Q5I_028

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_028 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.0608

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8Q5I|1|1|A|1458
8Q5I|1|1|U|1459
8Q5I|1|1|G|1460
8Q5I|1|1|A|1461
8Q5I|1|1|G|1462
8Q5I|1|1|A|1463
8Q5I|1|1|A|1464
8Q5I|1|1|C|1465
8Q5I|1|1|U|1466

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AE

60S ribosomal protein L31-B

Chain z

60S ribosomal protein L19-A