HL_8Q5I_048

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8Q5I|1|1|A|2350, 8Q5I|1|1|A|2351, 8Q5I|1|1|C|2352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_048 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0402

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8Q5I|1|1|G|2347
8Q5I|1|1|G|2348
8Q5I|1|1|G|2349
8Q5I|1|1|A|2350
8Q5I|1|1|A|2351
8Q5I|1|1|C|2352
8Q5I|1|1|G|2353
8Q5I|1|1|G|2354
8Q5I|1|1|G|2355
8Q5I|1|1|C|2356

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AF

60S ribosomal protein L32

Chain k

60S ribosomal protein L3