HL_8Q5I_052

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8Q5I|1|1|G|2590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_052 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.0588

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8Q5I|1|1|C|2588
8Q5I|1|1|U|2589
8Q5I|1|1|G|2590
8Q5I|1|1|G|2591
8Q5I|1|1|G|2592
8Q5I|1|1|G|2593
8Q5I|1|1|C|2594
8Q5I|1|1|G|2595
8Q5I|1|1|G|2596

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AC

60S ribosomal protein L29

Chain r

60S ribosomal protein L10