HL_8Q5I_054

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_054 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.086

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8Q5I|1|1|A|2645
8Q5I|1|1|A|2646
8Q5I|1|1|C|2647
8Q5I|1|1|A|2648
8Q5I|1|1|G|2649
8Q5I|1|1|A|2650
8Q5I|1|1|A|2651
8Q5I|1|1|A|2652
8Q5I|1|1|U|2653

Current chains

Chain 1

25S rRNA

Nearby chains

Chain s

60S ribosomal protein L11-B