HL_8Q5I_065

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8Q5I|1|1|G|3088, 8Q5I|1|1|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_065 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0495

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8Q5I|1|1|C|3082
8Q5I|1|1|U|3083
8Q5I|1|1|G|3084
8Q5I|1|1|A|3085
8Q5I|1|1|A|3086
8Q5I|1|1|C|3087
8Q5I|1|1|G|3088
8Q5I|1|1|C|3089
8Q5I|1|1|C|3090
8Q5I|1|1|U|3091
8Q5I|1|1|C|3092
8Q5I|1|1|U|3093
8Q5I|1|1|A|3094
8Q5I|1|1|A|3095
8Q5I|1|1|G|3096

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AN

60S ribosomal protein L40-B

Chain q

60S ribosomal protein L9-B

Chain w

Ribosomal protein L13