HL_8Q5I_066

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UUUUUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_066 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3814

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8Q5I|1|1|U|3161
8Q5I|1|1|U|3162
8Q5I|1|1|U|3163
8Q5I|1|1|U|3164
8Q5I|1|1|U|3165
8Q5I|1|1|A|3166

Current chains

Chain 1

25S rRNA

Nearby chains

Chain q

60S ribosomal protein L9-B

Chain u

60S ribosomal protein L14-B

Chain w

Ribosomal protein L13