HL_8QBT_002
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUUUGGGAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QBT_002 not in the Motif Atlas
- Homologous match to HL_4YCO_002
- Geometric discrepancy: 0.1189
- The information below is about HL_4YCO_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 42
Unit IDs
8QBT|1|5|G|32
8QBT|1|5|U|33
8QBT|1|5|U|34
8QBT|1|5|U|35
8QBT|1|5|G|36
8QBT|1|5|G|37
8QBT|1|5|G|38
8QBT|1|5|A|39
8QBT|1|5|C|40
Current chains
- Chain 5
- Pro-tRNA
Nearby chains
- Chain 4
- mRNA
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain i
- Small subunit ribosomal RNA; SSU rRNA
- Chain t
- 30S ribosomal protein S12
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