HL_8QBT_015

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8QBT|1|A|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QBT_015 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.0538

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8QBT|1|A|G|194
8QBT|1|A|A|195
8QBT|1|A|A|196
8QBT|1|A|A|197
8QBT|1|A|C|198
8QBT|1|A|A|199
8QBT|1|A|U|200
8QBT|1|A|C|201

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain L

50S ribosomal protein L15

Chain X

Large ribosomal subunit protein bL28