HL_8QBT_020

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8QBT|1|A|G|329, 8QBT|1|A|A|330, 8QBT|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QBT_020 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.0727

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

8QBT|1|A|G|327
8QBT|1|A|U|328
8QBT|1|A|G|329
8QBT|1|A|A|330
8QBT|1|A|C|331
8QBT|1|A|A|332
8QBT|1|A|G|333
8QBT|1|A|C|334
8QBT|1|A|C|335

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24