HL_8QBT_034

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUCACU

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QBT_034 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2048

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8QBT|1|A|G|882
8QBT|1|A|G|883
8QBT|1|A|U|884
8QBT|1|A|C|885
8QBT|1|A|A|892
8QBT|1|A|C|893
8QBT|1|A|U|894

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

Small ribosomal subunit protein uS19

Chain 5

Transfer RNA; tRNA

Chain u

Small ribosomal subunit protein uS13