HL_8QBT_041

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

8QBT|1|A|U|1325, 8QBT|1|A|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QBT_041 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.0492

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8QBT|1|A|G|1324
8QBT|1|A|U|1325
8QBT|1|A|U|1326
8QBT|1|A|A|1327
8QBT|1|A|A|1328
8QBT|1|A|U|1329
8QBT|1|A|C|1330

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein bL17

Chain S

Large ribosomal subunit protein uL22