HL_8QBT_044

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

8QBT|1|A|A|1453, 8QBT|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QBT_044 not in the Motif Atlas

Geometric match to HL_4V88_192

Geometric discrepancy: 0.1141

The information below is about HL_4V88_192

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8QBT|1|A|C|1451
8QBT|1|A|G|1452
8QBT|1|A|A|1453
8QBT|1|A|C|1454
8QBT|1|A|G|1455
8QBT|1|A|G|1456
8QBT|1|A|U|1457
8QBT|1|A|U|1458
8QBT|1|A|G|1459

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein bL17