HL_8QBT_063

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QBT_063 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.122

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8QBT|1|A|G|2303
8QBT|1|A|G|2304
8QBT|1|A|U|2305
8QBT|1|A|C|2306
8QBT|1|A|G|2307
8QBT|1|A|G|2308
8QBT|1|A|A|2309
8QBT|1|A|C|2310
8QBT|1|A|A|2311
8QBT|1|A|U|2312
8QBT|1|A|C|2313

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL5