3D structure

PDB id
8QBT (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli ApdP-stalled ribosomal complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GAAGACGAC
Length
9 nucleotides
Bulged bases
8QBT|1|A|A|2820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8QBT_076 not in the Motif Atlas
Homologous match to HL_5J7L_201
Geometric discrepancy: 0.0506
The information below is about HL_5J7L_201
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_64690.6
Basepair signature
cWW-cSW-F-F-F-F
Number of instances in this motif group
9

Unit IDs

8QBT|1|A|G|2819
8QBT|1|A|A|2820
8QBT|1|A|A|2821
8QBT|1|A|G|2822
8QBT|1|A|A|2823
8QBT|1|A|C|2824
8QBT|1|A|G|2825
8QBT|1|A|A|2826
8QBT|1|A|C|2827

Current chains

Chain A
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain N
Large ribosomal subunit protein bL17

Coloring options:


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