HL_8QBT_086

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QBT_086 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.0558

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8QBT|1|i|U|296
8QBT|1|i|G|297
8QBT|1|i|A|298
8QBT|1|i|G|299
8QBT|1|i|A|300
8QBT|1|i|G|301

Current chains

Chain i

16S rRNA

Nearby chains

Chain m

Small ribosomal subunit protein uS5

Chain y

Small ribosomal subunit protein uS17