HL_8QBT_092

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QBT_092 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1591

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8QBT|1|i|C|522
8QBT|1|i|A|523
8QBT|1|i|G|524
8QBT|1|i|C|525
8QBT|1|i|C|526
8QBT|1|i|G|527

Current chains

Chain i

16S rRNA

Nearby chains

Chain 4

mRNA

Chain t

30S ribosomal protein S12