HL_8QBT_102

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8QBT|1|i|U|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QBT_102 not in the Motif Atlas

Geometric match to HL_5J7L_005

Geometric discrepancy: 0.359

The information below is about HL_5J7L_005

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8QBT|1|i|C|1028
8QBT|1|i|U|1029
8QBT|1|i|U|1030
8QBT|1|i|C|1031
8QBT|1|i|G|1032
8QBT|1|i|G|1033

Current chains

Chain i

16S rRNA

Nearby chains