HL_8QBT_108

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QBT_108 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.0624

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8QBT|1|i|C|1314
8QBT|1|i|U|1315
8QBT|1|i|G|1316
8QBT|1|i|C|1317
8QBT|1|i|A|1318
8QBT|1|i|A|1319
8QBT|1|i|C|1320
8QBT|1|i|U|1321
8QBT|1|i|C|1322
8QBT|1|i|G|1323

Current chains

Chain i

16S rRNA

Nearby chains

Chain 1

Small ribosomal subunit protein uS19

Chain u

Small ribosomal subunit protein uS13

Chain v

Small ribosomal subunit protein uS14