HL_8QBT_109
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAUCAGAAUGC
- Length
- 11 nucleotides
- Bulged bases
- 8QBT|1|i|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QBT_109 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.0869
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8QBT|1|i|G|1356
8QBT|1|i|A|1357
8QBT|1|i|U|1358
8QBT|1|i|C|1359
8QBT|1|i|A|1360
8QBT|1|i|G|1361
8QBT|1|i|A|1362
8QBT|1|i|A|1363
8QBT|1|i|U|1364
8QBT|1|i|G|1365
8QBT|1|i|C|1366
Current chains
- Chain i
- 16S rRNA
Nearby chains
- Chain q
- Small ribosomal subunit protein uS9
- Chain v
- Small ribosomal subunit protein uS14
Coloring options: